I’ve made a Rat Brain Atlas API available on MATLAB Central File Exchange (linked to the GitHub Repo) based on my Rat Brain Atlas Webtool. The API wraps a web request to a JSON-formatted API endpoint, accessible in raw form using the following URL structure:

http://labs.gaidi.ca/rat-brain-atlas/api.php?ml=-2.3&ap=5.6&dv=1.1

The function ratBrainAtlas(ap,ml,dv) reads the web request, downloads the atlas images, and outputs a struct in S. If the Image Processing Toolbox is installed S will include marked images (red dot).